Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015819298.1_cds_XP_016500021.1_13886
CDS Infomation

[gene=LOC107818515] [db_xref=GeneID:107818515] [protein=protein AF-10-like] [protein_id=XP_016500021.1] [location=join(2970..2994,3075..3320,3491..3738,3871..4089,4160..4387,4486..4539,4658..4723,4810..4950,5042..5095,8315..8374,11195..11590,11735..11902)] [gbkey=CDS]
Sequence

ATGGAGAACAGATCCCCTTTGGATGATTTGAGACACGGAGAAGTTTCTCAAATTGAAGCA
TCTTCCAGTTCAGGAATCTGCTGCAGTCAACATTTTCTACAGTCAACTTCTGGCAACATT
CTCAAATTGAATGGTGCATGCCTTGAACAGTTGGTGAAGGCAAGTAATATGGGCCTGCTT
GAGCTTTCACCAGCAGATGAGCTGGAAGGAGAGCTCGTTTATTACCAGCACAGACTGCTT
TGTAATGCTGCTGCAAGGAAACGTTTTAGTGATGATTTAATTGTTAAGGTTGTGAATAGT
CTCCAACAGGAGACTGATGCTGCTAGACAACGAGAATGGGATGCTGTTCTCGTTAGCCAG
TATCTTTATGAGCTTAGGGAAGCCAAAAAGCAAGGAAGGAAAGAAAAACGACATAAGGAG
GCTCAGACTGTACTGGCTGCTGCAACTGCTGCAGCTGCCGCATCGTCTAGGATTTCATCA
TTGAGGAAAGATAATGTAGAAGAATCTATGCACCAGGAGATGAATGCTACCAATGAAAGG
CTTAGGCTTTCTTCCCAACAGCATCCTCGTGTCAAGGAGACGCTTTCAAGGCCAACCAGT
GTGCGGATATTACCAGAGACTAACTCTGATCTTGTCCAGCCAGGTTCAGATTTTTTGAAA
GACCATGCCAGAACTTGTGATGTCTGCAGACGGGCCGAGACCATTTTAAATCCCATCCTA
GTTTGTACCAGCTGCAAGGTTGCTGTTCACTTGGATTGCTATCGAAGTGTAAGAAACTCA
ACAGGTCCTTGGTATTGTGAACTATGCGCGGATTTATTGTCATCTGGGGGCTCTGGAGCT
CAAGCTTCTAATCTTTGGGAGAAGGAGAAACCTTGTTTTATTGCAGAATGTGGGTTATGT
GGTGGTACTGCAGGCGCTTTTAGAAAGTCAAATGATGGTCAATGGGTTCATGCCTTCTGT
GCTGAATGGGCCTTTGAATCAACTTTCAAAAGAGGGCAGGTACAACAAATAGAGGGAATG
GCAACTGTCCCCAAGGGTAACGATGTCTGCCTCGTATGCCAGCGGAGAAAAGGTGTATGC
ACTAAGTGTAGTTATGGTCACTGTCAGAGCACATTCCATCCCTCTTGTGCTAGAAGTGCT
GGCTTCTTTTTGATCATGAGAACTAACGGTGGCAAGCTGCAGCATAAAGCATATTGTGAT
AAACATAGTTTGGAACAGAGACTTAAGTCTGAGACTCAGAGACATGGGGTGGAAGAACTG
AAGAGCCTGAAGCAAGTCAGGGTTGAATTGGAGCGATTACGGCTATTATGCGAAAGAATT
GTTAAGAGAGAGAAGCTGAAGCGGGAAGTAATCCTTTGCTCACATGATATTCTAGCTTCA
AGTAGAGACAATGCTGTTTTATCTGCTCTGACTCGACACCCTTACTTCCAACCTGATGTT
AGTTCAGATTCAGCTACTACAACATCCATTAAAGGCTACACTGATGGCTATAAATCAGGC
AGTGAAACAATACAAAGATCAGATGACATAACAGTAGACAGTGCTGTAGCAGGAAAACGA
CGCATTAAGTTTCCTGTGCCTATGGACAATGATCAGAAGACTGATGATAGTTCTATATCA
CCCAACCCTGTCACACAAAAACCTGCACAACGAGCTTCATTTTCTGGGAAGCAAATCCCT
TATAGAGCTTCTTGCAATTCTACAGATGACGGGGACAAGCGATTGAGCTACAGAAAGCAT
ATGGAAACTTTTGAGAAAGAGCTGGTAATGACTTCAGATCAAGCCTCAATGAAGAACCAG
CGATTACCTAAAGGGTACGTCTATGTCCCAATCCGGTGCCTTCCGAAGGAGGAGGAAGCT
GCTCCAGATGAGTGTTCTGGAGAACCACTGGATCCTGATGGATAG

Peptide Sequence

PEP ID

XP_016500021.1
PEP Infomation

PREDICTED: protein AF-10-like [Nicotiana tabacum]
Sequence

MENRSPLDDLRHGEVSQIEASSSSGICCSQHFLQSTSGNILKLNGACLEQLVKASNMGLL
ELSPADELEGELVYYQHRLLCNAAARKRFSDDLIVKVVNSLQQETDAARQREWDAVLVSQ
YLYELREAKKQGRKEKRHKEAQTVLAAATAAAAASSRISSLRKDNVEESMHQEMNATNER
LRLSSQQHPRVKETLSRPTSVRILPETNSDLVQPGSDFLKDHARTCDVCRRAETILNPIL
VCTSCKVAVHLDCYRSVRNSTGPWYCELCADLLSSGGSGAQASNLWEKEKPCFIAECGLC
GGTAGAFRKSNDGQWVHAFCAEWAFESTFKRGQVQQIEGMATVPKGNDVCLVCQRRKGVC
TKCSYGHCQSTFHPSCARSAGFFLIMRTNGGKLQHKAYCDKHSLEQRLKSETQRHGVEEL
KSLKQVRVELERLRLLCERIVKREKLKREVILCSHDILASSRDNAVLSALTRHPYFQPDV
SSDSATTTSIKGYTDGYKSGSETIQRSDDITVDSAVAGKRRIKFPVPMDNDQKTDDSSIS
PNPVTQKPAQRASFSGKQIPYRASCNSTDDGDKRLSYRKHMETFEKELVMTSDQASMKNQ
RLPKGYVYVPIRCLPKEEEAAPDECSGEPLDPDG

Transcript Sequence

Gene sequence data has not been registered.